3Di™: Hybrid Open-Top, Light-Sheet Microscope (HOTLS)

A dedicated instrument for high-resolution 3D tissue imaging

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What the 3Di™ Open-Top Light-Sheet Microscope Does

The 3Di™ system converts intact biological specimens into quantitative 3D datasets.
It offers easy sample access, flexible sample holders, and two integrated optical paths for whole sample and high-resolution imaging.

Researchers can image large tissues, identify regions of interest, and acquire submicrometer detail within the same instrument.

With Aurora 3Di™, light-sheet microscopy becomes a seamless experience.

Learn more in the dedicated blog

Open-Top Design Advantages

Easy Sample Access

The 3Di™ microscope's open-top design provides researchers with easy access to their samples. Multiple holders accommodate a wide range of shapes, sizes, and preparation methods.

Multiple Sample Scanning

The 3Di™ microscope supports multi-well and multi-specimen scanning.
This enables higher throughput when imaging multiple samples in a session.

Large Scan Area

The microscope's large scan area, up to 12 cm × 7.5 cm × 1 cm, enables the acquisition of complete 3D images of large biological tissues.

Internal Architecture & Sample Flexibility

3Di Photo

A dedicated illumination path and two collection paths support precise acquisition.

The internal design maintains stable illumination, efficient light sheet delivery, and smooth switching between imaging modes.

Microscope Internal Design

Custom sample holders for 3D Tissue Imaging using Alpenglow Biosciences open top light sheet microscope (HOTLS)

Multiple sample holder configurations accommodate diverse specimen types and experimental requirements, ranging from organoids and small biopsies to thick tissue blocks and multiple whole organs loaded for simultaneous scanning.

Sample Holder Examples

Webinar on Tissue Clearing

Efficient Dual Optical Paths

HOTLS Microscope

Time Efficient

The system acquires overviews quickly in Scout mode, then captures high-resolution detail in Zoom mode, accelerating the imaging process and allowing researchers to obtain results faster.

Data Efficient

Scout and Zoom together provide a more complete representation of the tissue sample. Whole tissue context and local microstructure can be captured within a single workflow.

Versatile Imaging

The 3Di™ microscope provides a seamless transition between whole sample and high-resolution scans, allowing researchers to quickly analyze a sample at both low and high magnifications.

Advanced Objective Configuration

Illumination Objective

A dedicated objective is used to illuminate the sample with a sheet of light, providing high-quality optical sections and minimizing photobleaching.

Zoom Imaging

The Zoom (NODO) imaging mode provides high-resolution scans of regions of interest, enabling detailed analysis of specific areas.

Scout Imaging

The Scout (ODO) imaging mode provides a low-resolution, whole-sample scan, enabling rapid overview imaging and sample navigation.

3Di™: Dual Imaging Modes

Scout Mode

The Scout imaging mode provides rapid, low-resolution imaging, allowing for a quick sample overview and navigation.

Resolution: 2 μm/pixel

3D Imaging Whole Heart

Zoom Mode

The Zoom imaging mode offers high-resolution imaging of specific regions of interest identified with the Scout mode, enabling detailed analysis.

Resolution: 0.17 μm/pixel

3D Imaging Heart Vessels and Pericytes
See the Double Imaging in Action

3Di™: Intuitive User Interface: LUMI

  • Intuitive Scan Setup

    The 3Di™ microscope's intuitive user interface streamlines the imaging process by simplifying scan setup

    Intuitive Scan Setup
  • Live Preview

    The 3Di™ microscope provides simultaneous live previews in both Scout and Zoom modes, allowing for real-time visualization of your data.

    Live Preview
  • Easy Interface

    The 3Di™ microscope's user-friendly interface allows researchers of all levels to navigate and control the system easily.

    Easy Interface

Exploring the Seamless LUMI Interface

Discover how LUMI's intelligent design makes complex 3D imaging workflows simple and efficient. The interface provides real-time control and visualization for both Scout and Zoom imaging modes.

See the power of dual imaging modes working together to deliver comprehensive sample analysis.

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LUMI Preview
See LUMI in action

3Di™ Technical Specifications

Specification Value
Format Hybrid Open-Top Light-Sheet
Maximum Specimen Size Up to 12 cm × 7.5 cm × 1 cm (x, y, z)
Maximum Collection 0.7 NA
Maximum Illumination 0.06 NA
Scout Resolution 2 µm/pixel
Zoom Resolution 0.17 µm/pixel
Low Power Resolution Magnification 2.5 X
High Power Resolution Magnification 40 X
Laser Lines (standard, now up to 5 channels) 405 nm, 488 nm, 561 nm, 638 nm
Camera 2 × Hamamatsu ORCA Fusion BT
Refractive Index Capability RI 1.33 – 1.56
Multi well, Multi-specimen Scanning Yes
Microscope Control Software LUMI Graphical User Interface

Ready to Transform Your Research?

The 3Di™ microscope combines cutting-edge technology with a user-friendly design to deliver exceptional 3D imaging capabilities. From whole-sample overviews to high-resolution, detailed analysis, the 3Di™ provides the versatility and precision your research demands.

3Di Brochure
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