3Dai: Image Analysis for 3D Tissue Data

3Dai™ uses Artificial Intelligence and Machine Learning to analyze whole tissue datasets.

What 3Dai™ Does

3Dai™ analyzes full tissue volumes using AI-based models that identify patterns, measure spatial features, and quantify interactions across large datasets.
It supports datasets that range from gigabytes to hundreds of terabytes and uses automated pipelines to deliver quantitative outputs that support research, discovery, and interpretation.

The Role of AI & Machine Learning in Our Process

Custom Model Development

Custom Model Development

Create AI models for specific research needs, ensuring accuracy and reliability

Data transfer or connection.

Model Training & Validation

Generate insights into spatial organization and trends in your data

Speedometer

Performance Optimization

Fine-tune models for efficiency to run on 10 – 100s of TB-sized image datasets.

What is Spatial Statistics in 3D Tissue?

3Dai™ applies spatial statistics to examine how cells and structures relate to each other in three dimensional tissue volumes.
The city metaphor describes this intuitively.

Spatial Relationships

Spatial Relationship

Like interactions between city districts, spatial relationships reveal how cell populations relate to one another across the tissue.

Distance Metrics

Distance Metrics

Distances between cells are measured like distances between landmarks in a city. These metrics help identify cellular interactions and proximity-based patterns.

Density Analysis

Density Analysis

Density measurements reveal how cells or features concentrate in specific regions.
High-density zones can represent biologically active areas.

Clustering Patterns

Clustering Patterns

Like neighborhoods in a city, cells often form distinct clusters. Spatial clustering identifies whether groupings are random or associated with a biological function.

Spatial Analysis Capabilities

Custom Spatial Statistics

Develop tailored analytical methods for unique spatial datasets.
Create quantitative measurements that reflect the specific biology in your samples.

Feature Interaction

Identify relationships between different spatial elements in your tissue.
Analyze how features influence each other within the 3D environment.

Multi-Dimensional Analysis

Explore complex spatial relationships across multiple dimensions.
Combine structural, molecular, and positional information to reveal deeper patterns.

Pattern Detection

Reveal hidden spatial trends and regularities in your data.
Detect recurring structures and interpret underlying biological rules.

Spatial Clustering

Identify groups and patterns within spatial datasets.
Differentiate random variation from meaningful biological organization.

3D Tissue Imaging of Atopic Dermatitis Skin Punch Biopsy staining nerves, immune cells and nuclei.

Data Visualization and Outputs

Available 3Dai™ Outputs

  • 3D visualization videos

  • interactive data viewers

  • statistical graphs

  • custom spatial statistics

  • pattern detection

  • multidimensional analysis

  • publication support 

3Dai™ converts complex 3D biological data into interpretable visual outputs.
Visualization tools help researchers explore whole tissues, identify key findings and generate publication ready material.

Chart with multiple lines next to 3D scatter plot and close-up images of cells in different colors on a black background.
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Discover the 3Dai™ within the Aurora™ Platform